LOCUS       NZ_MG954378            13545 bp    DNA     circular CON 10-OCT-2022
DEFINITION  Acinetobacter baumannii strain SGH0905 plasmid pS32-1, complete
            sequence.
ACCESSION   NZ_MG954378
VERSION     NZ_MG954378.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14228296
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 13545)
  AUTHORS   Blackwell,G.A. and Hall,R.M.
  TITLE     Compatibility and mobilisation of RepAci1 and RepAci2 plasmids
            carrying antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 13545)
  AUTHORS   Blackwell,G.A. and Hall,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2018) School of Life and Environmental Sciences,
            The University of Sydney, Molecular Bioscience Building G08,
            Sydney, NSW 2006, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MG954378.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.5.0
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/10/2022 04:45:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 16
            CDSs (total)                      :: 16
            Genes (coding)                    :: 14
            CDSs (with protein)               :: 14
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 2 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..13545
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="SGH0905"
                     /db_xref="taxon:470"
                     /plasmid="pS32-1"
                     /country="Singapore"
                     /collection_date="2009"
     gene            142..1092
                     /gene="repM"
                     /locus_tag="HPG53_RS00005"
     CDS             142..1092
                     /gene="repM"
                     /locus_tag="HPG53_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004786597.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_001205343.1"
                     /translation="MRDLVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINAND
                     PLEVHADSYINQFGVHRNTAYQALKDACKDLFARQFSYQEKKANGNIRNVMSRWVSQI
                     AYNDNEATVDLIFAPAVVPFITRLEEQFTKYELQQVSSLSSAYAIRLYELLIQWRSTG
                     KTPTIELQEFRKKLGVLDNEYLRMAHLKERVLELSIKQINEHTDITVKYEQHKRGRSI
                     SGFSFTFKQKKKDSPSIERDPNTLELFSKMTDAQRHMFANKLSELPEMGRYSQGTESY
                     QQFAVRIAEMLQDPAQFKELYPYLKKVGYMPSNKKDTVNG"
     gene            1085..1660
                     /locus_tag="HPG53_RS00010"
     CDS             1085..1660
                     /locus_tag="HPG53_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005102333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_001096616.1"
                     /translation="MAKLSLSEVSKKFHVDRSTIYRAVRNGRLSRSSDGQFDLAEVIR
                     CFGEPEQTSQKIESSKQEGDESTKKLIAHLENEVKKYQEREERLMQQIDRMQTLIELK
                     SVAPATAAPHQDATACDTKMPQHATTQQDTDNKKNNELNIAENVAVPQQETTAYHTQT
                     LQHATLQSVAVPQHKKRGLFGRVLNAVFDND"
     gene            1680..1823
                     /locus_tag="HPG53_RS00015"
     CDS             1680..1823
                     /locus_tag="HPG53_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004786602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001125246.1"
                     /translation="MPKLKDIALGIIVAPLLIPIMLIASYQDKKALKKELDECQKEKD
                     QAS"
     gene            complement(2012..2530)
                     /locus_tag="HPG53_RS00020"
     CDS             complement(2012..2530)
                     /locus_tag="HPG53_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="WP_000447193.1"
                     /translation="METFAEPVFSNDLLAKAENGDTSAQLELAEIYLYGHGVDSDENQ
                     AEVWALKSAENGNVAAMFWLADGYVTYARLMEDDDKNDSLEHFQKAFKWFQKASENGH
                     SESMVELADLYTRADSGIEVNINKAFELREKAAKLGNKKAMRSLSVMYRDGIGIPKNT
                     DLAQSWWDKSEN"
     gene            2903..3190
                     /locus_tag="HPG53_RS00025"
     CDS             2903..3190
                     /locus_tag="HPG53_RS00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019383542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="WP_000438826.1"
                     /translation="MEQYFEWDEAKNRKNQKKHDISFETASLVFEDPLRISIQDRHTN
                     GEERWQTIGRVKGVLMLLVAHTIFDEDDCEIIRIISARQVTKAERNKYEHG"
     gene            3177..3491
                     /locus_tag="HPG53_RS00030"
     CDS             3177..3491
                     /locus_tag="HPG53_RS00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006582675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="WP_001983304.1"
                     /translation="MSMVRYSHKELNEKFGEKQDAEIQRLLAKGTVPDDQLDLSDIPE
                     ITDWSNAVRQNQFYRPVKQQTSIRLDADVLAWFKAQGKGYQTRMNEILRDAMLKELKN
                     HQ"
     gene            3619..6030
                     /gene="znuD2"
                     /locus_tag="HPG53_RS00035"
     CDS             3619..6030
                     /gene="znuD2"
                     /locus_tag="HPG53_RS00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000932945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor ZnuD2"
                     /protein_id="WP_000932953.1"
                     /translation="MLNKSKLFLALITLGASKILLAAEGPVTTLNTIVLTAQSDELGS
                     ELLGKSLNVSNQFIDTSKLKQRSTTLGDALGTELGIHSNQYGGGASTPIIRGQEGKRI
                     KVLQNNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIDYKI
                     PTQMPQDGLEGNTTLRFNTGSNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTPHYQ
                     SSSYNSLEDLENQNSIYKNLKYLPESWAESRVGTLGLSWIDDNTYLGVSYTHRHDEYG
                     LPAHSHLYEGCGASAIGIDSRISGLKNYLLYYPQLMDEQDINYINPRPDCHQHNHIHE
                     TNFSHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYIDYFHNELEGDKITNFFKN
                     TGKVGRIELSHQPLGELTGILGLQYLEQDNSALSPVHSQEGHTTYLDNQQLLNRNVTK
                     NFSVFGLEKYNWNDFTFELGARIEKQKVSMDYDIEKIKDSMKPWPNKYNSPYVEKNNK
                     IRAQNLKSILEAVQPNKETAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQEMYTHGM
                     HLATNSFEIGNRFLRKEKSNNLEISLAYKDDLLDYQISTYYYDFDNYIYLQTLNEVLG
                     TTKVRDQHTLRINHYSQSAANFYGLEGNIGYQFNSVYHGSLFGDYVKGRLTNLPDAVI
                     AYDIWNREPTLAPQKDRYTPRLPPARLGTRLKADFDESLKGEIEYYRVFKQDNISKFE
                     QVTSGYNMLNMTLAYKNKLSHTEYDLFFKANNLLDQKVYAHETFLPYIPQIGRNFSLG
                     LNLNF"
     gene            complement(6049..7139)
                     /locus_tag="HPG53_RS00040"
     CDS             complement(join(6049..6599,6599..7139))
                     /locus_tag="HPG53_RS00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612069.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISAba1 family transposase"
                     /protein_id="WP_085947913.1"
                     /translation="MTHLNELYLILNKSLKWNKSHLKCFALIMLVIILKQTCNLSSAS
                     KALPIKCLPQSFYRRMQRFFAGQYFDYRQISQLIFNMFSFDQVQLTLDRTNWKWGKRN
                     INILMLAIVYRGIAIPILWTLLNKRGNSDTKERIALIQRFIAIFGKDRIVNVFADREF
                     IGEQWFTWLIEQDINFCIRVKKNFIVTNHLGKNHKISDLFRHLKVGQIECRKRRILVG
                     RVKLYISALQLENGELLLVVSPQFNANAIQDYALRWEIETLFSCLKGRGFNLENTRLT
                     DPRRVKKLIAVLAISFCWCYLTGEWQHDQKKAIKIKKHGRLSMSLFRYGLDYVQMAIQ
                     RLIGFGKKEEFKEILAILRRQNPDRIRVL"
     gene            7241..7573
                     /locus_tag="HPG53_RS00045"
     CDS             7241..7573
                     /locus_tag="HPG53_RS00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000262332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000262332.1"
                     /translation="MVWVKTIAGKLEERIRYTSAICYNTFPVPKLMKASIFKLNESAF
                     KILAVRESYSHLSLAQLYDPEKMPFDLKQAHKENDSLVEKLYKSSDFKTDEERLERLF
                     HYYETMLN"
     gene            7581..>8036
                     /locus_tag="HPG53_RS00050"
                     /pseudo
     CDS             7581..>8036
                     /locus_tag="HPG53_RS00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004890075.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
     gene            <8036..8695
                     /locus_tag="HPG53_RS00055"
                     /pseudo
     CDS             <8036..8695
                     /locus_tag="HPG53_RS00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005025424.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            complement(8800..9621)
                     /locus_tag="HPG53_RS00060"
     CDS             complement(8800..9621)
                     /locus_tag="HPG53_RS00060"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-23 family carbapenem-hydrolyzing class D
                     beta-lactamase OXA-23"
                     /protein_id="WP_001046004.1"
                     /translation="MNKYFTCYVVASLFLSGCTVQHNLINETPSQIVQGHNQVIHQYF
                     DEKNTSGVLVIQTDKKINLYGNALSRANTEYVPASTFKMLNALIGLENQKTDINEIFK
                     WKGEKRSFTAWEKDMTLGEAMKLSAVPVYQELARRIGLDLMQKEVKRIGFGNAEIGQQ
                     VDNFWLVGPLKVTPIQEVEFVSQLAHTQLPFSEKVQANVKNMLLLEESNGYKIFGKTG
                     WAMDIKPQVGWLTGWVEQPDGKIVAFALNMEMRSEMPASIRNELLMKSLKQLNII"
     gene            9727..10817
                     /locus_tag="HPG53_RS00065"
     CDS             join(9727..10267,10267..10817)
                     /locus_tag="HPG53_RS00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612069.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISAba1 family transposase"
                     /protein_id="WP_085947913.1"
                     /translation="MTHLNELYLILNKSLKWNKSHLKCFALIMLVIILKQTCNLSSAS
                     KALPIKCLPQSFYRRMQRFFAGQYFDYRQISQLIFNMFSFDQVQLTLDRTNWKWGKRN
                     INILMLAIVYRGIAIPILWTLLNKRGNSDTKERIALIQRFIAIFGKDRIVNVFADREF
                     IGEQWFTWLIEQDINFCIRVKKNFIVTNHLGKNHKISDLFRHLKVGQIECRKRRILVG
                     RVKLYISALQLENGELLLVVSPQFNANAIQDYALRWEIETLFSCLKGRGFNLENTRLT
                     DPRRVKKLIAVLAISFCWCYLTGEWQHDQKKAIKIKKHGRLSMSLFRYGLDYVQMAIQ
                     RLIGFGKKEEFKEILAILRRQNPDRIRVL"
     gene            11149..11610
                     /locus_tag="HPG53_RS00070"
     CDS             11149..11610
                     /locus_tag="HPG53_RS00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004781077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DIP1984 family protein"
                     /protein_id="WP_000761346.1"
                     /translation="MKLAEALLLRSDQQKKIISLKQRINANVLVQDGDQPSEDPNELL
                     KQVFSLIQEFQKLSYAIHETNALTKLNDGRSLLALLTLRDEFVEQHKTLTAAISNTSR
                     ESDRYSTREIKWHKVIPVSSLQKQADDISLKLRDLNVLIQSTNWKIDLIEA"
     gene            complement(12106..12477)
                     /locus_tag="HPG53_RS00075"
     CDS             complement(12106..12477)
                     /locus_tag="HPG53_RS00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000504218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000504218.1"
                     /translation="MGEKVKTYAVRLDPQVAEFYDQLANSEGIRTSKLFSKILTNDFQ
                     SIAVKQQADRIEDLVNRLEKRIDDFEEDNNFSEKYYEDFSGLYFMMLWLLMKNGASKD
                     EVRMIQAKGYSYADDNYKRVK"
     gene            complement(12749..13003)
                     /locus_tag="HPG53_RS00080"
     CDS             complement(12749..13003)
                     /locus_tag="HPG53_RS00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001014301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001014303.1"
                     /translation="MNGQKIDFLRFSKQGNKYFFPCKTKHRPYVTLANFPIQDPAHAG
                     IFLSHTTHLTMTPLKALQDKDFSDFLGSQKRVQKNGLFLE"
CONTIG      join(MG954378.1:1..13545)
//

